bam_dict[sample] = [os.path.join("data/hic", sample, "sam", re.sub(".fastq.gz|.fq.gz", ".bam", os.path.basename(x))) for x in fastqs] ...

def cis_local_ratio(hic, local_threshold=20000): Calculate the cis/trans ratio for a Hic object. :param hic: :class:`~fanc,data.genomic.Hic` object :param local_threshold: Threshold, in base pairs, ...

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The genome is the full genetic complement of an organism, encoded in either DNA or, in many viruses, RNA. It includes both the genes and non-coding sequences. Limited whole genome sequencing (WGS ...

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Parasite genomics is the scientific discipline concerned with the study of the genetic material (genome) of parasites, primarily using sequencing, bioinformatics and computational tools.